Question: Where are the available MAF files?
0
gravatar for david.adelson
3.3 years ago by
Australia
david.adelson10 wrote:

Looking for available MAF data to use in a teaching situation.  The list of available files including MAF files does not seem to be available  (https://wiki.galaxyproject.org/Main/DataLibraries/Available%20Data).

I might be looking in the wrong place, but there is nothing in the shared data/available libraries page.

Thanks in advance,

Dave

 

data libraries maf • 725 views
ADD COMMENTlink modified 3.3 years ago by Jennifer Hillman Jackson25k • written 3.3 years ago by david.adelson10
1
gravatar for Bjoern Gruening
3.3 years ago by
Bjoern Gruening5.1k
Germany
Bjoern Gruening5.1k wrote:

Hi Dave,

I think all maf files are stored at the rsync server. For more details please refer to the Galaxy wiki: https://wiki.galaxyproject.org/Admin/UseGalaxyRsync

Ciao,

Bjoern

ADD COMMENTlink written 3.3 years ago by Bjoern Gruening5.1k
0
gravatar for Jennifer Hillman Jackson
3.3 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hi,

Bjoern is correct: the MAF datasets available on http://usegalaxy.org can be accessed either through the tools on the server (tool group "Fetch Alignments") or by downloading them from the Galaxy Rsync server. However, these were all sourced from UCSC. Any hosted in Galaxy's Rsync and a few others can be found directly on the UCSC Downloads server. Locate data by the primary genome's common name -> release version -> Conservation.

Best, Jen, Galaxy team

ADD COMMENTlink written 3.3 years ago by Jennifer Hillman Jackson25k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 153 users visited in the last hour