Question: Upload Genome Index To Galaxy For Bowtie Alignment?
7.6 years ago by
Whyte, Jeffrey • 20
Whyte, Jeffrey • 20 wrote:
Hello, On the Galaxy web interface, the option to map sequences with Bowtie for Illumina reads is listed under the Tools heading "NGS: Mapping". At the top of the page, it states, "Will you select a reference genome from your history or use a built-in index?" The options are: "Use a built-in index" or "Use one from the history". I have a genome index (swine) that is not available on the "built-in" list. Can I upload this index file to Galaxy under the Get Data page and then select it under "Use one from the history"? The index file is 3 GB, so any advice is appreciated before I try to upload it. Thanks in advance, Jeff Jeffrey J. Whyte, PhD Department of Biomedical Sciences University of Missouri-Columbia
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