Question: File Formats In Workflows
0
PaulW • 60 wrote:
Hi,
Was impressed by the Worflow screencasts but when I converted my
history
to a workflow it failed. This is because some of the tools output
tabular data, but some downstream tools require interval format input
and therefore fail. When I made the history I manually changed the
file
format and nominated the fields for chr,start,end,strand, but this is
lost in the workflow. Obvious ideas:
* Use a tabular-to-interval tool - I looked but can't find one
* Only used tools which output interval format - a less desirable
solution. e.g. I can't figure out how to filter out duplicate codons
in
my gene-BED-to-codon-BED file except using the statistics->count
function which outputs tabular.
Has anyone worked out how to change formats within a workflow?
regards,
Paul
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modified 8.5 years ago
by
Dannon Baker ♦ 3.7k
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written
8.5 years ago by
PaulW • 60
