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• Join tool failing for exceeding memory resources
  Hi, I would know why I have at the moment problem with the join function of Galaxy. Last week I u...
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• joining two fastq files
  Hello,  I received two fastq files for a single ChIP-seq sample and uploaded them to galaxy How...
• Time for FASTQ Splitter
  Hello!, I´ve been running a job during 9 hours, then I rerun it again and it is running now for ...
• How To Process Paired Reads In Galaxy
  Hi Users How do I process paired reads from an Ilumina Miseq platform? If I first use "Groomer" ...
• Multi-join name of the dataset
  Hi, I am analyzing RNA-seq data on multiple fastq files. I processed all of them to get the Feat...
• Galaxy Join of two large datasets makes duplicate rows, but same rows not duplicated when smaller file subsets are joined
  I'm using Galaxy, the Join tool. I've got two files, one a Locus ID and some data (file 1, ~220,0...
• Preprocessing Gdna Illumina Paired End Data For Mapping/Snp Calling
  This question is w/ regards to pre-processing whole genome resequencing data for mapping data to ...
• Fixed Parts Inside Workflows
  Dear All, I used to work with galaxy web site gladly, until I need to apply one workflow with (t...
• error using HTseq-count for conversion of .bam to raw counts
  Hello, I am trying to convert the .bam files I got as output from tophat alignment into raw coun...
• Do I trim paired end sets first or merge and then trim?
  Hi there, I have a quick question - I have raw 10Gb -sized datasets for my samples. For each one...
• FastQC doesn't work after Splitter
  Hello, I am working with paired-end reads, in separate files, and as far as I understood these s...
• Fastq Joiner Fails To Join Pe Data.
  Hi, I have HiSeq2000 paired end sequence data in two separate FASTQ files. I need to filter t...
• Joining overlapping paired end reads
  Dear All,   I have DNA sequencing data (targeted sequencing) produced by MiSeq. The size of the...
• Trouble with joining two datasets
  I am trying to join two datasets. Each of the datasets has a row that explains column entries. ...