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Question: Advise WGS analysis software and R tutorials for all steps of it from .gb and fasta file processing to reports
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gravatar for vassialk
3.7 years ago by
vassialk • 0
Belarus
vassialk • 0 wrote:

Advise, please, desktop windows WGS analysis software and R tutorials for all steps from .gb and fasta file processing to reports. Need to do WGS on MDR tuberculosis strains. Tried Ridom SeqSphere, CLC Genomics, R, Geneious pro, Lasergene. Except R, they are all commercial. GATK and SAMtools are not convenient to use fast.
soft seq wgs • 848 views
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modified 3.6 years ago by Jennifer Hillman Jackson ♦ 25k • written 3.7 years ago by vassialk • 0
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gravatar for Jennifer Hillman Jackson
3.6 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Are you using Galaxy? The public Main Galaxy at http://usegalaxy.org or another site? This forum is for using Galaxy in some way.

There are many tutorials available for Galaxy. Some of the tools in these may be in the Tool Shed, and any tool not found there can be wrapped and added. This wiki has a links to tutorials and usage examples, listed at the very top of the page and in the section "Learning Resources". If you are interested in wrapping a tool, see the right menu with links: Admin and Develop are the places to start.
http://wiki.galaxyproject.org/Support

Thanks, Jen, Galaxy team

 
ADD COMMENT • link written 3.6 years ago by Jennifer Hillman Jackson ♦ 25k
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