Question: To Get The Gene Name From Bed File
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gravatar for Shibu John
8.1 years ago by
Shibu John20
Shibu John20 wrote:
Hi, How can I get the gene names for the whole exome locations ( hg18).. ******************** chr1 58932 59892 chr1 357510 358470 chr1 610947 611907 chr1 851160 851280 chr1 855395 855608 chr1 856246 856366 chr1 860956 861196 ******************** I used the "Profile Annotations<http: main.g2.bx.psu.edu="" tool_runner?tool_id="Annotation_P" rofiler_0="">for a set of genomic intervals".. But I am not getting proper output... I just want the at least gene name in the fourth column for each location..like this ************************** chr1 58932 59892 OR4F5:ccds|CCDS30547.1 chr1 357510 358470 OR4F16:ccds|CCDS41220.1 chr1 610947 611907 OR4F16:ccds|CCDS41221.1 chr1 851160 851280 SAMD11:ccds|CCDS2.2 chr1 855395 855608 SAMD11:ccds|CCDS2.2 chr1 856246 856366 SAMD11:ccds|CCDS2.2 chr1 860956 861196 SAMD11:ccds|CCDS2.2 ****************** Can you help me to get this information from galaxy? Thanks, Shibu
galaxy • 1.2k views
ADD COMMENTlink written 8.1 years ago by Shibu John20
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