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Question: Where in the galaxy folders can I find the python wrappers? please be specific
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gravatar for rlee03
3.7 years ago by
rlee03 • 50
United States
rlee03 • 50 wrote:

May you please tell me which folder in the Galaxy-dist folders where the wrappers are?

how do I know if the python code is written for the wrapper or tool? Can you reference an example in the Galaxy-dist

Thanks.
wrapper • 869 views
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modified 3.7 years ago by Martin Čech ♦♦ 4.9k • written 3.7 years ago by rlee03 • 50
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gravatar for Martin Čech
3.7 years ago by
Martin Čech ♦♦ 4.9k
United States
Martin Čech ♦♦ 4.9k wrote:

The built in Galaxy tools are in the /tools folder. Please read the page that Björn linked you to before thoroughly: https://wiki.galaxyproject.org/Admin/Tools/AddToolTutorial

You can read the wrapper code and learn what it does in order to see if it is standalone or calls something else. Most/all tools distributed with Galaxy should be standalone.
ADD COMMENT • link written 3.7 years ago by Martin Čech ♦♦ 4.9k

Thanks Martin, sorry to keep asking all of these questions, but I am really new to this setup and your help is much appreciated.

so the Perl Script is for the tool, NOT the WRAPPER, in this tutorial? https://wiki.galaxyproject.org/Admin/Tools/AddToolTutorial

I'm under galaxy-dist/tools/stats/grouping.py is this grouping.py code for writing a python tool or wrapper? Or both. how did you know which one it's for?

Can you recommend a python file (simplest python code) I can work with so I can easily visualize how the wrapper is affecting the galaxy interface? any simple example would help me clear this up.

Thanks. -Roy

ADD REPLY • link written 3.7 years ago by rlee03 • 50
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