Question: Where in the galaxy folders can I find the python wrappers? please be specific
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gravatar for rlee03
2.8 years ago by
rlee0350
United States
rlee0350 wrote:

May you please tell me which folder in the Galaxy-dist folders where the wrappers are?

how do I know if the python code is written for the wrapper or tool? Can you reference an example in the Galaxy-dist

Thanks.

wrapper • 643 views
ADD COMMENTlink modified 2.8 years ago by Martin Čech ♦♦ 4.3k • written 2.8 years ago by rlee0350
1
gravatar for Martin Čech
2.8 years ago by
Martin Čech ♦♦ 4.3k
United States
Martin Čech ♦♦ 4.3k wrote:

The built in Galaxy tools are in the /tools folder. Please read the page that Björn linked you to before thoroughly: https://wiki.galaxyproject.org/Admin/Tools/AddToolTutorial

You can read the wrapper code and learn what it does in order to see if it is standalone or calls something else. Most/all tools distributed with Galaxy should be standalone.

ADD COMMENTlink written 2.8 years ago by Martin Čech ♦♦ 4.3k

Thanks Martin, sorry to keep asking all of these questions, but I am really new to this setup and your help is much appreciated.

so the Perl Script is for the tool, NOT the WRAPPER, in this tutorial? https://wiki.galaxyproject.org/Admin/Tools/AddToolTutorial

I'm under galaxy-dist/tools/stats/grouping.py is this grouping.py code for writing a python tool or wrapper? Or both. how did you know which one it's for?

Can you recommend a python file (simplest python code) I can work with so I can easily visualize how the wrapper is affecting the galaxy interface? any simple example would help me clear this up.

Thanks. -Roy

ADD REPLYlink written 2.8 years ago by rlee0350
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