Question: Find Common Peaks between two independent samples
gravatar for VY
3.7 years ago by
VY120 wrote:

I was wondering if there was a function in galaxy where if I input two (or more) Bed files where peak calling has taken place the output can be a bed file (or anything tangible) that only contains the common peaks between the two samples used as input.

I have two cell populations that ChIP-seq has been done on and I would like to see if they share common areas of enrichment.



peaks peak calling chip-seq • 1.5k views
ADD COMMENTlink modified 3.7 years ago by Hotz, Hans-Rudolf1.8k • written 3.7 years ago by VY120
gravatar for Hotz, Hans-Rudolf
3.7 years ago by
Hotz, Hans-Rudolf1.8k wrote:



Have you looked at " 'Intersect'he intervals of two datasets"?


Regards, Hans-Rudolf

ADD COMMENTlink written 3.7 years ago by Hotz, Hans-Rudolf1.8k
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