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Question: Find Common Peaks between two independent samples
1
gravatar for VY
3.7 years ago by
VY • 120
London
VY • 120 wrote:

I was wondering if there was a function in galaxy where if I input two (or more) Bed files where peak calling has taken place the output can be a bed file (or anything tangible) that only contains the common peaks between the two samples used as input.

I have two cell populations that ChIP-seq has been done on and I would like to see if they share common areas of enrichment.

 

Thanks
peaks peak calling chip-seq • 1.5k views
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modified 3.7 years ago by Hotz, Hans-Rudolf • 1.8k • written 3.7 years ago by VY • 120
0
gravatar for Hotz, Hans-Rudolf
3.7 years ago by
Hotz, Hans-Rudolf • 1.8k
Switzerland
Hotz, Hans-Rudolf • 1.8k wrote:

Hi

 

Have you looked at " 'Intersect'he intervals of two datasets"?

 

Regards, Hans-Rudolf
ADD COMMENT • link written 3.7 years ago by Hotz, Hans-Rudolf • 1.8k
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