Question: Error When Exporting Entire History using "Export to File"
0
gravatar for imwarren
3.2 years ago by
imwarren20
Singapore
imwarren20 wrote:

I was trying to export my histories from the public galaxy for backup. However I encountered the following error when i used the "Export to file" link from the History Options dropdown:

objectstore, __call_method failed: get_filename on , kwargs: {}

Any advice? :P

exporting • 837 views
ADD COMMENTlink modified 3.2 years ago • written 3.2 years ago by imwarren20
1
gravatar for imwarren
3.2 years ago by
imwarren20
Singapore
imwarren20 wrote:

Thanks for your help!

Not sure if related... but somehow my jobs had been stuck at the yellow "running" state for a long time. Or is the Galaxy server experiencing peak usage? Suddenly occurred to me that, perhaps https://status.galaxyproject.org/ could display current server load as well... to pacify anxious users :P

ADD COMMENTlink written 3.2 years ago by imwarren20
0
gravatar for Jennifer Hillman Jackson
3.2 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

We are actively working on portions of this functionality as a priority. The open ticket is here: https://trello.com/c/JYdLenNX

This may or may not be your case (I was able to generate the link for a history - no error message there) on the public Main Galaxy instance at http://usegalaxy.org. However, I would wait to use this function until it is resolved.

Just to make sure about this - at what step did you see the error? Or was it later in the process - meaning, loading into a local Galaxy or other? Please be aware that these files take time to "create" once the job is started - the link is shown but the data behind it takes some time to compress. The larger the history, the longer this can be. The compressed history stays on the server for a period of time, so you can get it later. This will be true even after the correction in the ticket above.

Thanks, Jen, Galaxy team

 

ADD COMMENTlink written 3.2 years ago by Jennifer Hillman Jackson25k
The error is at the early step. I didn't even manage to get a link for export. I will rename the steps in the history and retry export. thanks! (Will post an update) :p
ADD REPLYlink modified 3.2 years ago • written 3.2 years ago by imwarren20
0
gravatar for imwarren
3.2 years ago by
imwarren20
Singapore
imwarren20 wrote:

I have checked, there is no duplicate history name as far as i can tell, but i am still getting the error:

objectstore, __call_method failed: get_filename on , kwargs: {}

ADD COMMENTlink modified 3.2 years ago • written 3.2 years ago by imwarren20

The history in question is shared here: https://usegalaxy.org/u/imwarren/h/supo-test-1-subtraction

i hope that helps in replicating the problem for troubleshooting!

ADD REPLYlink written 3.2 years ago by imwarren20

Disregard the request below, this is perfect.  I've reproduced the error after importing this history.  Thanks!

ADD REPLYlink written 3.2 years ago by Dannon Baker3.7k

Do you mind if I use user impersonation (log in as you) to replicate and fix this error?

ADD REPLYlink written 3.2 years ago by Dannon Baker3.7k

yep, go ahead!
 

ADD REPLYlink written 3.2 years ago by imwarren20
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