From some days I've been trying to use IGGalaxy but I got stuck when I tried to use IMGT Loader using a .txt coming from the merge (done from terminal with the "paste -d" command) of three files outputs from IMGT/HighV-QUEST. These three files are the ones mentioned in the IMGT Loader workbench, the "1_Summary, 5_AA-sequence and 6_Junction files". Basically I have merged horizontally these files into a single, tab separated, file that I saved as a txt file. Then I load it and when I tried to use it within IMGT Loader I got this error "
Traceback (most recent call last): File "/home/galaxy/galaxy/shed_tools/testtoolshed.g2.bx.psu.edu/repos/davidvanzessen/imgt_loader_igg/f8ba6ab5514b/imgt_loader_igg/imgtconvert.py", line 48, in <module> fSummary = pd.read_csv(triplets, sep="\t") IndexError: list index out of range "
Need some help!!
Thank you very much.