I am currently working on automatic installation for DELLY.
DELLY has 3 major dependencies: boost, bamtools and seqtk. The way DELLY's current Makefile works is by passing in the directories of where these three major tools were built. The following is a sample command of how DELLY is built:
make all BOOST_ROOT=$BOOST_ROOT_DIR BAMTOOLS_ROOT=$BAMTOOLS_ROOT SEQTK_ROOT=$SEQTK_ROOT
The current issue is obtaining the BOOST_ROOT_DIR, BAMTOOLS_ROOT, and SEQTK_ROOT environment variables in the tool_dependency file. All three of these environment variables have been declared in each tools individual tool dependency file.
Please let me know if this is possible, and if so, how to do this!