I want to analyze my data by mirTools 2. I want to know is there any way to ask to add this tool to the tools that are provided by galaxy project. Or even, I want to know is there any way to add Adapter_trim Perl script to galaxy project to get a suitable data that is usable in mirTools 2.
as far as I know mirTools is a collection of different tool and not a specific tool, isn't? If this is correct just search for all specific tools in Galaxy. You will find a lot of those. For example Galaxy offers you a variety of different trimming applications.