I am very new to galaxy and trying to use cuffmerge with hg19 build from ensembl ftp://ftp.ensembl.org/pub/current_gtf downloading as a gtf format but when i upload to galaxy it recognises as GFF - I have tried to change to GTF in data types in edit attributes but unsurprisingly it cannot complete the task if i do this.
I know this has been discussed previously in a post: http://gmod.827538.n3.nabble.com/GTF-sniffer-td1876784.html
But simply i am not experienced enough with programming or bioinformatics to change this myself. I have used the UCSC hg19 build aswell but it would be nice if these files from ensembl work aswell.
Any help would be appreciated