Hello,
I am facing to an error during the installation of different tool shed package. My distribution of Galaxy is installed on a Xubuntu system. I can not install bx-python 0.7.1, galaxy_sequence_utils, package_galaxy_ops_1_0_0 for nearly the same problem. I can not identified which problem might have my configuration. could you help me ?
Stephane
Traceback (most recent call last):
File "/home/galaxy/galaxy-dist/tooldependencies/bx-python/0.7.1/devteam/package_bx_python_0_7/2d0c08728bca/venv/bin/pip", line 8, in <module>
load_entry_point('pip==1.3.1', 'console_scripts', 'pip')()
File "/home/galaxy/galaxy-dist/tooldependencies/bx-python/0.7.1/devteam/package_bx_python_0_7/2d0c08728bca/venv/local/lib/python2.7/site-packages/pip-1.3.1-py2.7.egg/pip/__init__.py", line 149, in main
return command.main(args[1:], options)
File "/home/galaxy/galaxy-dist/tooldependencies/bx-python/0.7.1/devteam/package_bx_python_0_7/2d0c08728bca/venv/local/lib/python2.7/site-packages/pip-1.3.1-py2.7.egg/pip/basecommand.py", line 181, in main
logger.fatal('Storing complete log in %s' % log_fn)
File "/home/galaxy/galaxy-dist/tooldependencies/bx-python/0.7.1/devteam/package_bx_python_0_7/2d0c08728bca/venv/local/lib/python2.7/site-packages/pip-1.3.1-py2.7.egg/pip/log.py", line 48, in fatal
self.log(self.FATAL, msg, *args, **kw)
File "/home/galaxy/galaxy-dist/tooldependencies/bx-python/0.7.1/devteam/package_bx_python_0_7/2d0c08728bca/venv/local/lib/python2.7/site-packages/pip-1.3.1-py2.7.egg/pip/log.py", line 75, in log
backwardcompat.fwrite(consumer, rendered)
File "/home/galaxy/galaxy-dist/tooldependencies/bx-python/0.7.1/devteam/package_bx_python_0_7/2d0c08728bca/venv/local/lib/python2.7/site-packages/pip-1.3.1-py2.7.egg/pip/backwardcompat/__init__.py", line 88, in fwrite
f.write(s)
ValueError: I/O operation on closed file
