Question: Why cufflinks v1&v2 "-p 4" parameter just using 100% cpu on my local host?
0
gravatar for wukai199010
4.2 years ago by
United States
wukai1990100 wrote:

Hi,

When I using cufflinks version 1 and version 2 on my local host, I use the parameters of "-p 4", just like below, but it always just use the 1 cpu. My host is :

HOSTNAME                ARCH         NCPU  LOAD  MEMTOT  MEMUSE  SWAPTO  SWAPUS
-------------------------------------------------------------------------------
compute-r710-0-2        lx26-amd64      8 91.62   31.4G   23.2G   32.0G   20.1G
 

my command line of cufflinks is:

 cufflinks -p 4 --library-type fr-firststrand -o liquid_culture_120h_clout liquid_culture_120h_thout/accepted_hits.bam &

 

So, thanks for somebody can help me! I can get the result, but taking 15 days(my data is 21G).

And, Why cufflinks v1 and v2 have different result?

 

 

 

 

cufflinks • 955 views
ADD COMMENTlink written 4.2 years ago by wukai1990100
1
gravatar for fubar
4.2 years ago by
fubar1.1k
Australia
fubar1.1k wrote:

Sorry, I can't provide an answer, but maybe if you ask over on the cufflinks group at https://groups.google.com/forum/#!forum/tuxedo-tools-users the tool authors might yield a quicker and more expert answer to this and your other questions than those of us reading this Galaxy support forum.

ADD COMMENTlink modified 4.2 years ago • written 4.2 years ago by fubar1.1k

Ok, thanks!

ADD REPLYlink written 4.2 years ago by wukai1990100
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