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Question: Galaxy 101: The first thing you should try do not work...
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gravatar for jean-philippe.brosseau
4.3 years ago by
jean-philippe.brosseau • 0
United States
jean-philippe.brosseau • 0 wrote:

I get the following message when I try to group the exon and snp lists

 

An error occurred running this job: --Group by c4: count[c4] /HOME/galaxy/.local/lib/python2.6/site-packages/numpy/random/__init__.py:99: RuntimeWarning: compiletime version 2.6 of module 'mtrand' does not match runtime version 2.7 from mtrand import *

 

thanks
software error • 1.2k views
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modified 3.8 years ago by Martin Čech ♦♦ 4.9k • written 4.3 years ago by jean-philippe.brosseau • 0

thank for the answer.

I was not aware of the Python 2.6 dependency. I never install any Python as I am not a programmer...
 

ADD REPLY • link written 4.3 years ago by jean-philippe.brosseau • 0
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gravatar for Nate Coraor
4.3 years ago by
Nate Coraor ♦ 3.2k
United States
Nate Coraor ♦ 3.2k wrote:

It looks like this is a local instance, and not usegalaxy.org? It looks like your version of numpy (in /HOME/galaxy/.local) was installed with Python 2.6 but Galaxy is running tools using Python 2.7. For this to work correctly, you'll need to reinstall numpy using Python 2.7.

Many tools are being migrated to the Galaxy Tool Shed, where dependencies (such as numpy) will automatically be installed for you when installing tools like the Group tool. However, the Group tool itself has not yet been migrated to the Tool Shed.
ADD COMMENT • link written 4.3 years ago by Nate Coraor ♦ 3.2k
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