Question: Picrust Upload
gravatar for Ines
4.8 years ago by
Ines10 wrote:
Hello, I was trying to run a dataset through Picrust on the web-based Galaxy. I did the OTU table in Qiime as explained in picking-tutorial, with the command line: -i $path/file.fasta -r $path/rep-set/97_otus.fasta -o $path/OTU_Table.biom. I uploaded the file in Get Data, and I want to run the Normalize by Copy Number step, but I get the following message History does not include a dataset of the required format / build. I am not sure if when I generate the OTU Table I need to specify a particular format, or what the problem is. I would really appreciate some advice. I attach the biom file generated in case you need to take a look. Thank you very much in advance.
galaxy • 2.6k views
ADD COMMENTlink modified 4.8 years ago by Jennifer Hillman Jackson25k • written 4.8 years ago by Ines10
gravatar for Jennifer Hillman Jackson
4.8 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hello Ines, You have reached the support mailing list for the public Main Galaxy instance at While we can help with many usage questions, sometimes for specific tools it is best to contact the tool author and/or lab running the instance hosting the tool. This is one of those cases. I am guessing that you are using this tool from the Huttenhower Lab's public instance? Even though I suspect that you just need to assign the correct datatype in the UI, I honestly do not know enough about the tool implementation to confirm that as a solution, or help you with more details without going through the tool in more detail. The team there is certainly in a better position of experience to help. Their contact for questions and help with this tool is: users Maybe you have already found this contact, but if not, hopefully it leads to a solution! Best, Jen Galaxy team -- Jennifer Hillman-Jackson
ADD COMMENTlink written 4.8 years ago by Jennifer Hillman Jackson25k
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