I was trying to run a dataset through Picrust on the web-based Galaxy.
did the OTU table in Qiime as explained in
with the command line: pick_closed_reference_otus.py -i
$path/rep-set/97_otus.fasta -o $path/OTU_Table.biom.
I uploaded the file in Get Data, and I want to run the Normalize by
Number step, but I get the following message History does not include
dataset of the required format / build.
I am not sure if when I generate the OTU Table I need to specify a
particular format, or what the problem is. I would really appreciate
I attach the biom file generated in case you need to take a look.
Thank you very much in advance.
You have reached the support mailing list for the public Main Galaxy
instance at http://usegalaxy.org. While we can help with many usage
questions, sometimes for specific tools it is best to contact the tool
author and/or lab running the instance hosting the tool. This is one
I am guessing that you are using this tool from the Huttenhower Lab's
public instance? http://huttenhower.sph.harvard.edu/galaxy/
Even though I suspect that you just need to assign the correct
in the UI, I honestly do not know enough about the tool implementation
to confirm that as a solution, or help you with more details without
going through the tool in more detail. The team there is certainly in
better position of experience to help. Their contact for questions and
help with this tool is: https://groups.google.com/d/forum/picrust-
Maybe you have already found this contact, but if not, hopefully it
leads to a solution!