Question: Tool Xml Form Building Bug With <Options From_Data_Table="..."> ?
0
damion@learningpoint.ca • 20 wrote:
Has anyone run into this? I'm building a general-purpose filter
control on
my galaxy tool xml template for enabling numeric fields to be filtered
by >
< etc. parameters - in a user friendly way. I have a select list
<para>
driven by a data table: ...
<param name="filter_column" type="select" label="Col">
<options from_data_table="bccdc_blast_fields"/> </param>...This works fine in
building a list of fields to select from. Then I add <filter type="sort_by" column="1"/> <filter type="add_value" name="TESTESTTEST" value="WHWHWHW"/>
but nothing happens, sort remains incorrect and no extra value. I try
these same filters on a previous <param> in form that is driven by
<options from_file="bccdc_blast_bins.loc"> and they work fine.
I also tried applying <fiilter type="static_value" ...=""> to no avail
on
from_data_table options tag, but from from_file options, no problem.
So I start to think there's a bug whereby NO filters work on
<options from_data_table="bccdc_blast_fields"/> input? I've surveyed the
galaxy.tools.parameters.dynamic_optionspython code, but can't see a
decision point there in which from_data_table work vs from_file choice
is
made; is it in another script file?
I'm using a BioLinux 2012 install that includes Galaxy.
Help appreciated!
Regards,
Damion DooleyBC Centre for Disease ControlVancouver, BC
ADD COMMENT
• link
•
modified 5.1 years ago
by
Jennifer Hillman Jackson ♦ 25k
•
written
5.1 years ago by
damion@learningpoint.ca • 20
