Question: Tool Xml Form Building Bug With <Options From_Data_Table="..."> ?
0
gravatar for damion@learningpoint.ca
5.1 years ago by
Has anyone run into this? I'm building a general-purpose filter control on my galaxy tool xml template for enabling numeric fields to be filtered by > < etc. parameters - in a user friendly way. I have a select list <para> driven by a data table: ... <param name="filter_column" type="select" label="Col"> <options from_data_table="bccdc_blast_fields"/> </param>...This works fine in building a list of fields to select from. Then I add <filter type="sort_by" column="1"/> <filter type="add_value" name="TESTESTTEST" value="WHWHWHW"/> but nothing happens, sort remains incorrect and no extra value. I try these same filters on a previous <param> in form that is driven by <options from_file="bccdc_blast_bins.loc"> and they work fine. I also tried applying <fiilter type="static_value" ...=""> to no avail on from_data_table options tag, but from from_file options, no problem. So I start to think there's a bug whereby NO filters work on <options from_data_table="bccdc_blast_fields"/> input? I've surveyed the galaxy.tools.parameters.dynamic_optionspython code, but can't see a decision point there in which from_data_table work vs from_file choice is made; is it in another script file? I'm using a BioLinux 2012 install that includes Galaxy. Help appreciated! Regards, Damion DooleyBC Centre for Disease ControlVancouver, BC
galaxy • 1.0k views
ADD COMMENTlink modified 5.1 years ago by Jennifer Hillman Jackson25k • written 5.1 years ago by damion@learningpoint.ca20
0
gravatar for damion@learningpoint.ca
5.1 years ago by
Darn, never mind. Discovered the " />" at end of <options from_data_table="bccdc_blast_fields"/> was of course causing all the <filters> that followed to be ignored. Thanks to those who may have chipped in on this one. (I get digest mode). d. To: galaxy-user@lists.bx.psu.edu Subject: Tool XML form building bug with <options from_data_table="..."> ? Has anyone run into this? I'm building a general-purpose filter control on my galaxy tool xml template for enabling numeric fields to be filtered by > < etc. parameters - in a user friendly way. I have a select list <para> driven by a data table: ... <param name="filter_column" type="select" label="Col"> <options from_data_table="bccdc_blast_fields"/> </param>...
ADD COMMENTlink written 5.1 years ago by damion@learningpoint.ca20
0
gravatar for Jennifer Hillman Jackson
5.1 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Moved to galaxy-dev, closing. Jen Galaxy team -- Jennifer Hillman-Jackson http://galaxyproject.org
ADD COMMENTlink written 5.1 years ago by Jennifer Hillman Jackson25k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 178 users visited in the last hour