Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: Default for "reference_source_selector"
0
gravatar for danielfortin86
3.9 years ago by
danielfortin86 • 110
United States
danielfortin86 • 110 wrote:

In the situation of a custom tool with an xml definition, is it possible to specify the default value for the "select" type if its from a "data_table". Please see below     

<param name="reference_source_selector" type="select" label="Genomic Index to use in Alignment (bwaRef)">
      <options from_data_table="bwa_mem_indexes" />
 </param>

 

I'd like to specify which bwa_mem_index should be used as default for different tools

 
galaxy • 779 views
ADD COMMENT • link •
modified 3.9 years ago • written 3.9 years ago by danielfortin86 • 110
1
gravatar for Bjoern Gruening
3.9 years ago by
Bjoern Gruening ♦ 5.1k
Germany
Bjoern Gruening ♦ 5.1k wrote:

Hi Daniel,

not that I know of but you can sort them if this helps.

Cheers,

Bjoern
ADD COMMENT • link written 3.9 years ago by Bjoern Gruening ♦ 5.1k
0
gravatar for danielfortin86
3.9 years ago by
danielfortin86 • 110
United States
danielfortin86 • 110 wrote:

I've discovered that specifying a default is possible if the options are explicitly specified in the xml but can't figure out if it's possible when using a data_table like "bwa_mem_indexes" or blast indexes or something similar. Is this possible at all?
ADD COMMENT • link written 3.9 years ago by danielfortin86 • 110
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 178 users visited in the last hour