Question: Cuffdiff Fpkm=0 "Not Significant"
5.3 years ago by
i b • 330
i b • 330 wrote:
Dear forum, whoever knows this please tell me!!!!! Given two fpkm . e.g. fpkm 1=2922828 and fpkm 2=0, why cuffdiff does not calculate differential expression. those genes are listed in cuffdiff as not significant and the log2 fold change is infinite , either negative or positve...how do i consider them when i want to pull out the genes that are differentially expressed between treated and untreated samples? how do i interpret these data? thanks, ib
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