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Question: Unable To Bam Data On Ucsc Or Ensembl Browsers
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gravatar for Joachim Jacob
6.2 years ago by
Joachim Jacob • 50
Joachim Jacob • 50 wrote:
Hi all, I have aligned RNA seq read with tophat to drosophila melanogaster 3 genome. However, I cannot view the alignment in UCSC (error Byte-range request was ignored by server), nor in Ensembl. Error in Ensembl: Malformed URL The URL used to reach this page may be incomplete or out-of-date. A location is required to build this page. For example, chromosomal coordinates: http://www.ensembl.org/Drosophila_melanogaster/Location/View?r=2L: 21650001-21700000 Perhaps can somebody find out what I am doing wrong? Thanks, Joachim -- Joachim Jacob, PhD Rijvisschestraat 120, 9052 Zwijnaarde Tel: +32 9 244.66.34 Bioinformatics Training and Services (BITS) http://www.bits.vib.be @bitsatvib
rna-seq tophat • 718 views
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modified 6.2 years ago by Daniel Blankenberg ♦♦ 1.7k • written 6.2 years ago by Joachim Jacob • 50
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gravatar for Daniel Blankenberg
6.2 years ago by
Daniel Blankenberg ♦♦ 1.7k
United States
Daniel Blankenberg ♦♦ 1.7k wrote:
Hi Joachim, This is for your own local server? You can fix the byte-range issue issue by putting your Galaxy server behind a proxy such as nginx (http://wiki.g2.bx.psu.edu/Admin/Config/Performance/nginx%20Proxy) or apache (http://wiki.g2.bx.psu.edu/Admin/Config/Apache%20Proxy). It does look like Ensembl has changed their BAM handling and the links have stopped working, we'll work on a fix here, but do not have a time frame. Thanks, Dan
ADD COMMENT • link written 6.2 years ago by Daniel Blankenberg ♦♦ 1.7k
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