Question: Cuffdiff
gravatar for Irene Bassano
6.4 years ago by
United Kingdom
Irene Bassano90 wrote:
Hi, just few questions about cuffdiff if anyone can answer: can I load more than two sam/bam files?Galaxy gives spaceonly for two files 2.what to use as input: cufflinks, cuffcompare or cuffmerge? Thanks a lot!
rna-seq cuffmerge cufflinks • 829 views
ADD COMMENTlink modified 6.4 years ago by Jennifer Hillman Jackson25k • written 6.4 years ago by Irene Bassano90
gravatar for Jennifer Hillman Jackson
6.4 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hello Irene, Change the tool form for the option "Perform replicate analysis:" to be "Yes" (the default is "No"). Use two conditions (Groups). GTF output from any of these may be appropriate. Please see the tutorial on Galaxy main at: FAQ: And the "Common uses" protocols on the Cufflinks web site plus their new paper (also linked at this site, from side bar, as "Protocol"): Best, Jen Galaxy team -- Jennifer Jackson
ADD COMMENTlink written 6.4 years ago by Jennifer Hillman Jackson25k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 180 users visited in the last hour