Question: Cuffdiff
gravatar for Irene Bassano
5.6 years ago by
United Kingdom
Irene Bassano90 wrote:
Hi, just few questions about cuffdiff if anyone can answer: can I load more than two sam/bam files?Galaxy gives spaceonly for two files 2.what to use as input: cufflinks, cuffcompare or cuffmerge? Thanks a lot!
rna-seq cuffmerge cufflinks • 642 views
ADD COMMENTlink modified 5.6 years ago by Jennifer Hillman Jackson24k • written 5.6 years ago by Irene Bassano90
gravatar for Jennifer Hillman Jackson
5.6 years ago by
United States
Jennifer Hillman Jackson24k wrote:
Hello Irene, Change the tool form for the option "Perform replicate analysis:" to be "Yes" (the default is "No"). Use two conditions (Groups). GTF output from any of these may be appropriate. Please see the tutorial on Galaxy main at: FAQ: And the "Common uses" protocols on the Cufflinks web site plus their new paper (also linked at this site, from side bar, as "Protocol"): Best, Jen Galaxy team -- Jennifer Jackson
ADD COMMENTlink written 5.6 years ago by Jennifer Hillman Jackson24k
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