Question: Input For Gatk Depthofcoverage
0
Lilach F • 190 wrote:
Hi Galaxy Team,
I'm trying to use GATK DepthOfCoverage, and to give a BAM file of
alined
results as input.
My steps were:
1. BWA alignment
2. SAM-to-BAM
3. rmdup.
when I'm trying to give 3 (rmdup results) as an input to GATK
DepthOfCoverage, an error appears: "
Sequences are not currently available for the specified build."
What did I do wrong?
Many thanks!
Lilach