Question: While Executing Tool Galaxy Giving This Error
0
La Chi • 60 wrote:
hi,
will you please help me how can i fix this error'
thanks
Traceback (most recent call last):
File "/galaxy-dist/tools/ova/getsitesnotoverlap_tf.py", line 60, in
?
if __name__ == "__main__": __main__()
File "/galaxy-dist/tools/ova/getsitesnotoverlap_tf.py", line 50, in
__main__
result_set = connection.execute( "select * from
getsitesnotoverlap_tf (" + userid + "," + tfid + "," + bpover + "," +
ch + "," + sf +")" )
File "/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.4.egg/sqlalch
emy/engine/base.py", line 824, in execute
return Connection.executors[c](self, object, multiparams, params)
File "/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.4.egg/sqlalch
emy/engine/base.py", line 888, in _execute_text
return self.__execute_context(context)
File "/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.4.egg/sqlalch
emy/engine/base.py", line 896, in __execute_context
self._cursor_execute(context.cursor, context.statement,
context.parameters[0], context=context)
File "/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.4.egg/sqlalch
emy/engine/base.py", line 950, in _cursor_execute
self._handle_dbapi_exception(e, statement, parameters, cursor,
context)
File "/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.4.egg/sqlalch
emy/engine/base.py", line 931, in _handle_dbapi_exception
raise exc.DBAPIError.instance(statement, parameters, e,
connection_invalidated=is_disconnect)
sqlalchemy.exc.ProgrammingError: (ProgrammingError) column "chr1" does
not exist
LINE 1: select * from getsitesnotoverlap_tf (6,149,-1000,chr1,tf)
^
'select * from getsitesnotoverlap_tf (6,149,-1000,chr1,tf)' {}