Question: Save These Dates! July 25-27: Galaxy Community Conference
gravatar for Dave Clements
7.0 years ago by
Dave Clements ♦♦ 2.5k
United States
Dave Clements ♦♦ 2.5k wrote:
Hello all, I am pleased to announce that the 2012 Galaxy Community Conference (GCC2012) has been scheduled for July 25-27, 2012 at the University of Illinois Chicago. See for more information on the meeting, and for sponsorship opportunities. Abstract submission and registration deadlines will be announced in the coming months. Please reserve July 25-27 on your calendar now, and hope to see you in Chicago next summer! Dave Clements PS: If your curious to know what goes on at a Galaxy meeting, see the GCC2011 page for an idea: --
galaxy • 811 views
ADD COMMENTlink modified 7.0 years ago by Mike Dufault270 • written 7.0 years ago by Dave Clements ♦♦ 2.5k
gravatar for Mike Dufault
7.0 years ago by
Mike Dufault270
Mike Dufault270 wrote:
Hello all,   I am trying to run through the GATK pipeline on the Galaxy Test page. I have a question related to the UnifiedGenotyper wrapper page. At the bottom of the page, I choose the "Advanced" tab for "Basic or Advanced Analysis options."    After the automatically refreshed, I choose the "Annotation Types" that I was interested in. Then below that are options for "Annotation Interfaces/Groups:" What are these options used for? I have looked all over the web, on the GATK wiki and at the GATK Q&A page (located at without any luck. Are these options important?   The description located at the bottom of the page lists: Group - One or more classes/groups of annotations to apply to variant calls.   What type of group or class is "Standard", "Experiments" or "WorkInProgress?"   Does "class" refer to a Java "class" in a similar way that annotations are "arguments?"  Any clarification would be very helpful.   Thanks, Mike
ADD COMMENTlink written 7.0 years ago by Mike Dufault270
Hi Mike, Apologies for the delay in reply, your message was threaded under an announcement (perhaps accidentally sent as a reply to that thread?). For GATK, we are not offering support yet as the pipeline is still considered beta. Most tool that are only on Test, and not on Main, are considered to be the same. That said, I can let you know that the tool is under active development, may change at any time, and comments about the current implementation is welcomed at galaxy development list. Take care, Jen Galaxy team -- Jennifer Jackson
ADD REPLYlink written 7.0 years ago by Jennifer Hillman Jackson25k
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