Question: Cufflinks Fpkm
gravatar for Li, Jilong (MU-Student)
7.1 years ago by
Hi, I want to use cufflinks handle the results of Tophat. Cufflinks uses FPKM to normalize the expression data. I think FPKM is for pair-end reads. right? My reads are single-end. Is it right if I use FPKM? Thank you very much! Victor
rna-seq cufflinks • 1.3k views
ADD COMMENTlink modified 6.9 years ago by Jennifer Hillman Jackson25k • written 7.1 years ago by Li, Jilong (MU-Student)80
gravatar for Jennifer Hillman Jackson
6.9 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hello Victor, This is OK for use with single-end reads. But, if you have questions about how to exactly interpret the values, the Cufflinks authors would be a good resource, the contact information is in the example of this wiki Support section: Hopefully this helps, Best, Jen Galaxy team -- Jennifer Jackson
ADD COMMENTlink written 6.9 years ago by Jennifer Hillman Jackson25k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 169 users visited in the last hour