Question: Re: Rnaseq Helicobacter Pylori
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Jennifer Hillman Jackson ♦ 25k wrote:
Hello Kaisa,
These are related formats and generally differ only in the 9th column,
which is important for data labeling with these tools.
The formats as well as some utilities to help with parsing are
documented here:
http://cufflinks.cbcb.umd.edu/gff.html
Also note the help email: tophat.cufflinks@gmail.com
For the data files in GFF, you may try contacting the data source and
asking for help. It is possible that the attributes needed to create a
GTF file exist in other files and the data could be transformed
(outside
of Galaxy).
Hopefully this helps,
Jen
Galaxy team
--
Jennifer Jackson
http://usegalaxy.org
http://galaxyproject.org/wiki/Support