Restart Server

Question: Restart Server

10.1 years ago by

very • 70

very • 70 wrote:

Do you provide any program to restart the galaxy server? Currently, I just Ctrl+z to exit the run.sh, but some time it kept the port binding, so I have to restart the computer to release the port to start the server. If I work remotely, this put me into trouble.

galaxy • 2.7k views

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modified 10.1 years ago by Sean Davis • 220 • written 10.1 years ago by very • 70

10.1 years ago by

Greg Von Kuster • 840

Greg Von Kuster • 840 wrote:

Hello, Start up your server as a daemon ( depending on your platform ). Perhaps something like: to start server: sh run.sh --daemon to stop server: sh run.sh --stop-daemon Greg Von Kuster Galaxy Development Team

ADD COMMENT • link written 10.1 years ago by Greg Von Kuster • 840

10.1 years ago by

Sean Davis • 220

Sean Davis • 220 wrote:

Ctrl+z will place the server into the background and not stop it. Therefore, it will keep the port bound. You will need to use Ctrl+c, I think. Sean

ADD COMMENT • link written 10.1 years ago by Sean Davis • 220

If this is helpful, I'll throw this out there, too. We're using suse linux (I think these things are dependent on your flavor of linux, but maybe not?), and typically there are scripts to start and stop services in /etc/rc.d. So, I wrote one up. Before I include it, the caveats: 1. There are various checks and such that could be done, but are not. This is kind of quick-and-dirty. 2. Might be linux flavor-dependent 3. You have to set GALAXY_RUN and GALAXY_USER appropriately #!/bin/sh # # Galaxy init script written by Michael Rusch # ### BEGIN INIT INFO # Provides: galaxy # Required-Start: $local_fs $remote_fs $network # X-UnitedLinux-Should-Start: postgresql # Required-Stop: $local_fs $remote_fs $network # X-UnitedLinux-Should-Stop: # Default-Start: 3 5 # Default-Stop: 0 1 2 6 # Short-Description: Galaxy daemon # Description: Start the Galaxy daemon ### END INIT INFO . /etc/rc.status rc_reset GALAXY_RUN="/srv/galaxy/run.sh" GALAXY_USER="galaxy" case "$1" in start) echo -n "Starting galaxy..." sudo -u $GALAXY_USER $GALAXY_RUN --daemon rc_done=$rc_done_up rc_status -v ;; stop) echo -n "Stopping galaxy..." sudo -u $GALAXY_USER $GALAXY_RUN --stop-daemon rc_status -v ;; restart) $0 stop $0 start rc_status ;; *) echo "Usage: $0 start|stop|restart" exit 1 esac rc_exit Then you can just do cd /etc/rc.d ./galaxy start or ./galaxy stop or ./galaxy restart Michael

ADD REPLY • link written 10.1 years ago by Michael Rusch • 80

10.1 years ago by

James Taylor • 320

United States

James Taylor • 320 wrote:

ctrl-z does not terminate a process, it just suspends it. You should use ctrl-c to send an interrupt, which will cause Galaxy to shutdown cleanly. Or you can run as a daemon using the method Greg suggested. -- jt

ADD COMMENT • link written 10.1 years ago by James Taylor • 320

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