Question: Re: Upload Of Most Recent Genome Data For Apis Mellifera Onto Galaxy And/Or Ncsc Web Sites?
gravatar for Anton Nekrutenko
7.2 years ago by
Penn State
Anton Nekrutenko1.7k wrote:
Diana: It is best to direct such requests to mailing list, which I am doing. Adding this genome should be possible, but will take us some time. Thanks, anton Anton Nekrutenko
galaxy • 625 views
ADD COMMENTlink modified 7.2 years ago by Jennifer Hillman Jackson25k • written 7.2 years ago by Anton Nekrutenko1.7k
gravatar for Jennifer Hillman Jackson
7.2 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hi Diana, As Anton mentioned, we can add this genome to our working list. A check-in with UCSC about their plans for an update seems appropriate and that will be part of our prioritization of this genome. Meanwhile, the fastest way for you to start working with this genome right away is to load it into your history as a custom reference genome. Simply upload the fasta version via FTP and most tools will function just as if the genome was native to Galaxy. You can even create your own custom browser for the genome using the GTB (Galaxy Track Browser). The GTB is undergoing active development right now, so you will notice new features over the near-term. Currently, visualization for custom genomes is based on coordinates only, but adding in the reference genome back-bone sequence itself is a priority and will be added in soon. Any data mapped to the reference genome can be visualized and there is feedback between the browser and your working histories. Please see: Thanks for using Galaxy! Best, Jen Galaxy team -- Jennifer Jackson
ADD COMMENTlink written 7.2 years ago by Jennifer Hillman Jackson25k
Thanks, I appreciate all your help-- Diana ************************************************** Diana Cox-Foster, Professor Department of Entomology Penn State University 501 ASI Bldg. University Park, PA 16802 Office phone: 814-865-1022 Dept. Office phone: 814-865-1895
ADD REPLYlink written 7.2 years ago by Diana Cox-Foster40
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