HI all, I know that there have been previous posts about this error but here is my encounter with it. Is there something specific between HTSEq-Count output to EdgeR?
When I use HTSEQ-output for EdgeR I get following error "Fatal error: Exit code 1 () Error in row.names<-.data.frame(tmp, value = c("X0", "X4", "X4", : duplicate 'row.names' are not allowed Calls: row.names<- -> row.names<-.data.frame Warning message: non-unique values when setting 'row.names': ‘X0’," however, when i use the same HTSEQ-out for DSEQ2 i do not get any errors in addition, if I use featurecount output for EdgeR or DSEQ2, i do not get any errors either. I also tried not using annotation file for EdgeR, i still get that duplicate row name error.
help me out please!