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• Duplicate row name error using Limma
  Hi, Trying to run limma on Galaxy. After downloading my files, which contain gene IDs, I get thes...
• Remove duplicate rows from table
  I have a table in Galaxy with 19,132 rows.  I can remove duplicates using group from join, subtra...
• EdgeR duplicate row error
  HI all, I know that there have been previous posts about this error but here is my encounter with...
• Duplicate row names error with EdgeR on FeatureCounts files
  Hi all, I created tabular count files using FeatureCounts with a GTF file (iGenomes, UCSC hg38) ...
• Galaxy Join of two large datasets makes duplicate rows, but same rows not duplicated when smaller file subsets are joined
  I'm using Galaxy, the Join tool. I've got two files, one a Locus ID and some data (file 1, ~220,0...
• Unable to select GTF file from history in featureCounts (Galaxy version 1.6.0.3)
  Hello, I have recently begun mapping Drosophila RNA-Seq data with STAR (in Galaxy), and I am now...
• Removing Duplicate Lines From A Table
  Hi, I have a table and would like to remove duplicate lines based on values in the first column....
• Need help with "Join two Datasets" tool
  Is there a way to do a complete merge with this tool? For my 2 data sets there are going to be ro...
• using SAF gene annotation file in featurecounts
  Hello! I'm new to Galaxy and was wondering if I could get some help with using the featurecounts...
• Macs- Duplicate Reads Removal
  Hi, Does MACS remove duplicate reads automatically during the peak calling? I'm running controls...
• Featurecounts' added built-in annotations
  Not a question: Just to say thanks for adding the 'built-in' annotation files under featureCounts...
• Removing sequence duplicates
  I have used top hat in galaxy to map my files. After mapping i am interested in removing sequence...
• error message when running Deseq2 on featureCounts output files
  I get the following error message when running Deseq2 on two samples (tumor and normal) that was ...
• Reads on Y chromosome while doing sequecing with a female donor
  Hello, When looking closely to my alignments data I found something interesting. Some of my read...
• Galaxy: Use header row of tabular data for column names?
  Is there a way to use metadata in a header row of a tab-delimited format for column names? Altern...
• Multi-join name of the dataset
  Hi, I am analyzing RNA-seq data on multiple fastq files. I processed all of them to get the Feat...
• Are reads number normalized on transcript length ?
  Hello, I used featurecounts to obtain reads number from a RNA-seq file (.bam). I would know if t...
• Text Editing
  Hello Luce, I can explain the use of the tools "Text Manipulation". For each file independently,...