Question: UniProt ID mapping/retrieval crashing on usegalaxy.org
0
gravatar for jimhu
17 days ago by
jimhu20
jimhu20 wrote:

on usegalaxy.org

Fatal error: Exit code 1 () Traceback (most recent call last): File "/galaxy/main/shed_tools/toolshed.g2.bx.psu.edu/repos/bgruening/uniprot_rest_interface/48522382b6a4/uniprot_rest_interface/uniprot.py", line 74, in <module> args.out.write(_map(que

input is a tabular file with a list of uniprot ids that I am trying to map to accessions in order to generate a fasta

ADD COMMENTlink modified 17 days ago by Jennifer Hillman Jackson25k • written 17 days ago by jimhu20
1

This is working on usegalaxy.eu

ADD REPLYlink written 17 days ago by jimhu20
0
gravatar for Jennifer Hillman Jackson
17 days ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

This error is due to changes with the Uniprot API. An updated tool version (0.2) is available and I have requested that it be updated at Galaxy Main https://usegalaxy.org. Details if interested: https://github.com/galaxyproject/usegalaxy-playbook/issues/172

Meanwhile, you can use the tool at Galaxy EU https://usegalaxy.org. Be sure to use version 0.2. Both versions are listed in the tool panel at this server, but version 0.1 is the one with a problem and should be avoided.

Thanks for reporting the problem and our apologies for any confusion this caused! Jen, Galaxy team

ADD COMMENTlink written 17 days ago by Jennifer Hillman Jackson25k
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