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Question: Change default file naming in galaxy
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gravatar for o.mikh90
5 weeks ago by
o.mikh90 • 10
o.mikh90 • 10 wrote:

Hello! Sorry if this has been discussed somewhere already.

I've put together a galaxy pipeline for ChIP-seq analysis and now need to run it on 32 different samples. I've launched it, but matching the file names such as "peaks on data 132" back to originally uploaded fastq files with meaningful names is tedious and almost impossible.

Could you please advise on how to keep meaningful names on all files throughout the analysis?

Thanks in advance Olga
rename dataset galaxy tag chip-seq • 91 views
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modified 5 weeks ago by Jennifer Hillman Jackson ♦ 25k • written 5 weeks ago by o.mikh90 • 10
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gravatar for Jennifer Hillman Jackson
5 weeks ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hi Olga,

Add a hashtag to the original datasets and any derived from it will inherit that same tag.

FAQs: https://galaxyproject.org/support/

You can alternatively edit your workflow so that datasets are actually renamed with the original dataset name. Within the workflow editor, use the "Configure Output: Rename dataset" function. You can also add or remove tags within that same edit function group.

Related tutorials (using dataset collections might be right for you considering the number of samples): https://galaxyproject.github.io/training-material/topics/galaxy-data-manipulation/

Thanks! Jen, Galaxy team
ADD COMMENT • link modified 5 weeks ago • written 5 weeks ago by Jennifer Hillman Jackson ♦ 25k
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