Question: Using filename as a tool variable
0
gravatar for d.hand
10 months ago by
d.hand • 0
d.hand • 0 wrote:

I know you can use #{input} in the workflow editor to change the name of the output files, however is it possible to feed this into the tools as well? I've tried to use it in the tool options such as graph label:"#{input}" or name:"#{input}", but this doesn't work.

I assume this is because galaxy has no way to feed this unless the tools are designed for it?

tool variable name wrapper dataset • 380 views
ADD COMMENT • link • modified 9 months ago • written 10 months ago by d.hand • 0
0
gravatar for Jennifer Hillman Jackson
10 months ago by
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Correct, the tool wrapper must be written in a way that consumes input file names as options/variables.

Thanks! Jen, Galaxy team

ADD COMMENT • link written 10 months ago by Jennifer Hillman Jackson ♦ 25k
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gravatar for d.hand
9 months ago by
d.hand • 0
d.hand • 0 wrote:

Is there any conceivable workaround for renaming a single fasta header with the inputfile? other than making my own tool?

ADD COMMENT • link written 9 months ago by d.hand • 0
0
gravatar for d.hand
9 months ago by
d.hand • 0
d.hand • 0 wrote:

Is there any conceivable workaround for renaming a single fasta header with the inputfile? other than making my own tool?

ADD COMMENT • link written 9 months ago by d.hand • 0
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