Hello, I'm trying to use Galaxy to run SnpEff eff with a custom database I prepared with SnpEff version 4.3. Although this is the recommended version in SnpEff eff, the file is automatically recognized as from version 4.0 and this attribute is not editable, so the file is not recognized by the system as a valid custom database. Does anyone know how to overcome this problem? Thank you very much!
The tool wrappers were just updated to address a few problems, including database version issues. The updated wrappers are not on the public usegalaxy* servers yet and at least one other problem has been reported (https://biostar.usegalaxy.org/p/29336/).
We are asking the developers for feedback at Gitter, please follow and/or join in on the conversation here: https://gitter.im/galaxy-iuc/iuc?at=5b96a0e1728ddf02828a72cb
Thanks! Jen, Galaxy team