Question: SnpEff custom genome data in Galaxy
0
gravatar for barbara.lazzari
9 days ago by
barbara.lazzari0 wrote:

Hello, I'm trying to use Galaxy to run SnpEff eff with a custom database I prepared with SnpEff version 4.3. Although this is the recommended version in SnpEff eff, the file is automatically recognized as from version 4.0 and this attribute is not editable, so the file is not recognized by the system as a valid custom database. Does anyone know how to overcome this problem? Thank you very much!

snpeff version galaxy index • 39 views
ADD COMMENTlink modified 8 days ago • written 9 days ago by barbara.lazzari0
0
gravatar for Jennifer Hillman Jackson
9 days ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

The tool wrappers were just updated to address a few problems, including database version issues. The updated wrappers are not on the public usegalaxy* servers yet and at least one other problem has been reported (https://biostar.usegalaxy.org/p/29336/).

We are asking the developers for feedback at Gitter, please follow and/or join in on the conversation here: https://gitter.im/galaxy-iuc/iuc?at=5b96a0e1728ddf02828a72cb

Thanks! Jen, Galaxy team

ADD COMMENTlink written 9 days ago by Jennifer Hillman Jackson25k
0
gravatar for barbara.lazzari
8 days ago by
barbara.lazzari0 wrote:

Thank you very much, I'll keep updated! All the best!

ADD COMMENTlink written 8 days ago by barbara.lazzari0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 106 users visited in the last hour