slurm Installation with Galaxy: Error python: error: Couldn't find the specified plugin name for auth/none looking at all files

Question: slurm Installation with Galaxy: Error python: error: Couldn't find the specified plugin name for auth/none looking at all files

3 months ago by

mmoore • 30

United States

mmoore • 30 wrote:

I'm attempting to install a slurm cluster on my Galaxy instance.
Ubuntu 18.04 base. installed as per http://galaxyproject.github.io/training-material/topics/admin/tutorials/connect-to-compute-cluster/tutorial.html slurm installs, and I can run jobs and submit batches to the cluster. slurm-drmaa and DRMAA Python installed job_conf.xml modified, as per above.

Error in galaxy logs:

galaxy.jobs.runners.drmaa DEBUG 2018-08-29 21:08:23,790 [p:3728,w:1,m:0] [SlurmRunner.work_thread-0] (57) submitting file /home/galaxy/galaxy_home/galaxy/database/jobs_directory/000/57/galaxy_57.sh galaxy.jobs.runners.drmaa DEBUG 2018-08-29 21:08:23,790 [p:3728,w:1,m:0] [SlurmRunner.work_thread-0] (57) native specification is: -p Galaxy python: error: Couldn't find the specified plugin name for auth/none looking at all files

(if I set auth/munge in munge.conf, the error changes correspondingly)

I've been hunting this down for a number of hours now, and the solution is escaping me.

Has anyone kindly seen this before, or any suggestions greatly appreciated!

Regards, Mat

admin slurm gtn galaxy • 267 views

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modified 3 months ago by Bjoern Gruening ♦ 5.1k • written 3 months ago by mmoore • 30

3 months ago by

Bjoern Gruening ♦ 5.1k

Germany

Bjoern Gruening ♦ 5.1k wrote:

The solution to Mat's problem was to install this version of slurm-drmaa

ADD COMMENT • link written 3 months ago by Bjoern Gruening ♦ 5.1k

3 months ago by

Jennifer Hillman Jackson ♦ 25k

United States

Jennifer Hillman Jackson ♦ 25k wrote:

Hi,

The maintainers for GTN tutorials are best people to offer troubleshooting advice. They can also update/correct the tutorial if something is wrong or unclear. Maintainers and other contacts (Gitter) are listed at the top level for GTN tutorials per topic group. For Admin topics, that is here: http://galaxyproject.github.io/training-material/topics/admin/

I just asked for help at the Gitter channel for you (and linked to this post) but next time you can do that yourself: https://gitter.im/galaxyproject/Lobby?at=5b871b5d1d3a5711b6b85706

Please follow the feedback at Gitter or someone may reply back here. You could also jump into the conversation there. This kind of troubleshooting usually requires some back and forth, so the chat format generally works best.

Thanks! Jen, Galaxy team

ADD COMMENT • link written 3 months ago by Jennifer Hillman Jackson ♦ 25k

3 months ago by

mmoore • 30

United States

mmoore • 30 wrote:

Thanks Jen! I appreciate it, Mat

ADD COMMENT • link written 3 months ago by mmoore • 30

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