Hi, so very new to this...
I have tried a number of different file types to upload - the tools of analysis that I'd like to use all have said "no dataset available."
What do I need to do differently to get these files once sucessfully uploaded, "available"?
Hey, so I'm trying to basically use galaxy to unzip my gVCF.gz files -- i guess by uploading them and "converting" them to VCF files...
The issue is, I only have the option to covert it to tabix.
Even if I wanted to use the VCFtoTab-delimited tool, I cannot - it requires VCF.
What should I do? Ultimately I'm trying to take the genomic variant and non variant calls file, and sort them in in a tab-delimited format by coordinate.
That isn't even the right file type i'm looking for.
I'm trying to figure out how to create a tab-delimited, coordinate sorted, file type that displays the depth at each coordinate included in the .bed file.
What file can I start with and what tools, if possible, can I use to modify to get the intended result I need?