Question: ChIPseq vs RNAseq comparison
0
gravatar for VY
4 months ago by
VY • 120
London
VY • 120 wrote:

Hello,

I have a number of RNAseq bigwigs and ChIPseq bigwigs and would like to compare overall how counts in one location compare to counts in the same location in the contrasting experiment. To plot literally something like the figure here :

https://www.nature.com/articles/nn.4532/figures/14

Does someone know how I could go about doing this? What software and or package to use on galaxy? Thanks

rna-seq chip-seq • 198 views
ADD COMMENT • link • modified 4 months ago by Bjoern Gruening ♦ 5.1k • written 4 months ago by VY • 120
1
gravatar for Bjoern Gruening
4 months ago by
Bjoern Gruening ♦ 5.1k
Germany
Bjoern Gruening ♦ 5.1k wrote:

Could you use deeptools for this or https://github.com/deeptools/pyGenomeTracks ?

ADD COMMENT • link written 4 months ago by Bjoern Gruening ♦ 5.1k
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