Question: ChIPseq vs RNAseq comparison
0
gravatar for VY
4 months ago by
VY120
London
VY120 wrote:

Hello,

I have a number of RNAseq bigwigs and ChIPseq bigwigs and would like to compare overall how counts in one location compare to counts in the same location in the contrasting experiment. To plot literally something like the figure here :

https://www.nature.com/articles/nn.4532/figures/14

Does someone know how I could go about doing this? What software and or package to use on galaxy? Thanks

rna-seq chip-seq • 198 views
ADD COMMENTlink modified 4 months ago by Bjoern Gruening5.1k • written 4 months ago by VY120
1
gravatar for Bjoern Gruening
4 months ago by
Bjoern Gruening5.1k
Germany
Bjoern Gruening5.1k wrote:

Could you use deeptools for this or https://github.com/deeptools/pyGenomeTracks ?

ADD COMMENTlink written 4 months ago by Bjoern Gruening5.1k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 178 users visited in the last hour