MultiQC Salmon output

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Question: MultiQC Salmon output

7 months ago by

jevanveen • 10

jevanveen • 10 wrote:

Hello!

Has anyone had success pulling data from Salmon into MultiQC? It doesn't appear as an option in the version of MultiQC on the main Galaxy instance but maybe someone has done this with the "custom input" parameter?

If not, perhaps the version of MultiQC on the main Galaxy instance can be updated? I believe from the MultiQC docs that the newest version of MultiQC can handle Salmon output. Thanks!

rna-seq salmon multiqc galaxy • 231 views

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modified 7 months ago by Jennifer Hillman Jackson ♦ 25k • written 7 months ago by jevanveen • 10

7 months ago by

Jennifer Hillman Jackson ♦ 25k

United States

Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Updating the tool for this function is a good idea.

Other updates are in progress for this tool, please review current issues and create a new enhancement request issue ticket if this is not captured yet. https://github.com/search?q=org%3Agalaxyproject+multiqc&type=Issues

Thanks! Jen, Galaxy team

ADD COMMENT • link written 7 months ago by Jennifer Hillman Jackson ♦ 25k

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