Question: Want all counts on MPileup including zero counts
gravatar for ghalib.bardai
10 months ago by
ghalib.bardai10 wrote:

I am using the SAM tool MPileup application. The analysis parameters I use gives as an output the number of counts associated with coordinates. It does not however output coordinates with zero counts. I would like to have this information. Is there a way to do this?


ADD COMMENTlink modified 10 months ago by Jennifer Hillman Jackson25k • written 10 months ago by ghalib.bardai10
gravatar for y.hoogstrate
10 months ago by
y.hoogstrate460 wrote:

The arguments -a and -aa have not yet been implemented in the galaxy wrapper. This feature is BTW only available in the latest samtools version as samtools 1.3.1 does not even have it (but 1.6 does).

ADD COMMENTlink written 10 months ago by y.hoogstrate460
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 165 users visited in the last hour