Question: Want all counts on MPileup including zero counts
1
gravatar for ghalib.bardai
3 months ago by
ghalib.bardai10 wrote:

I am using the SAM tool MPileup application. The analysis parameters I use gives as an output the number of counts associated with coordinates. It does not however output coordinates with zero counts. I would like to have this information. Is there a way to do this?

Thanks

ADD COMMENTlink modified 3 months ago by Jennifer Hillman Jackson24k • written 3 months ago by ghalib.bardai10
1
gravatar for y.hoogstrate
3 months ago by
y.hoogstrate460
Netherlands
y.hoogstrate460 wrote:

The arguments -a and -aa have not yet been implemented in the galaxy wrapper. This feature is BTW only available in the latest samtools version as samtools 1.3.1 does not even have it (but 1.6 does).

ADD COMMENTlink written 3 months ago by y.hoogstrate460
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