Dear Galaxy Team,
We encountered a problem while installing freebayes and its dependencies via Tool Shed.
Galaxy correctly installed freebayes (18.104.22.168), samtools (0.1.19) and gawk (4.1.3) (all have the Current Installation Status "Installed through Conda"), but then failed on the last dependency "parallel" (Status: "Not Installed").
The strange thing is: parallel was installed correctly. Its callable from the command line, (e.g. parallel --help works fine) and installed with the latest version. But it's not recognized by Galaxy.
We are using the Galaxy - Docker image in Version 17.09.
We would greatly appreciate any advice on how to resolve this issue.
Have you tried just reinstalling it?
Yes, the tools, parallel, and our entire Galaxy instance. The issues remained...