Question: Fastq files not recognized
gravatar for tkirkland
8 days ago by
tkirkland0 wrote:

I have uploaded data sets that are labelled fastqsanger.gz. But when I try to use those data sets I get the message "No fastqsanger.gz data set available". Can you tell me what I am doing wrong?



ADD COMMENTlink modified 8 days ago by Jennifer Hillman Jackson23k • written 8 days ago by tkirkland0
gravatar for Jennifer Hillman Jackson
8 days ago by
United States
Jennifer Hillman Jackson23k wrote:


I cannot reproduce this at Galaxy Main

Double check that:

  • The datasets are actually assigned the datatype (not just uploaded with that file extension)
  • The tool accepts fastqsanger or fastqsanger.gz input

I tested with a few tools that expect fastqsanger formatted input at Galaxy Main. For your case:

Thanks! Jen, Galaxy team

ADD COMMENTlink written 8 days ago by Jennifer Hillman Jackson23k
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