Question: Fastq files not recognized
gravatar for tkirkland
11 weeks ago by
tkirkland0 wrote:

I have uploaded data sets that are labelled fastqsanger.gz. But when I try to use those data sets I get the message "No fastqsanger.gz data set available". Can you tell me what I am doing wrong?



ADD COMMENTlink modified 11 weeks ago by Jennifer Hillman Jackson24k • written 11 weeks ago by tkirkland0
gravatar for Jennifer Hillman Jackson
11 weeks ago by
United States
Jennifer Hillman Jackson24k wrote:


I cannot reproduce this at Galaxy Main

Double check that:

  • The datasets are actually assigned the datatype (not just uploaded with that file extension)
  • The tool accepts fastqsanger or fastqsanger.gz input

I tested with a few tools that expect fastqsanger formatted input at Galaxy Main. For your case:

Thanks! Jen, Galaxy team

ADD COMMENTlink written 11 weeks ago by Jennifer Hillman Jackson24k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 90 users visited in the last hour