Question: Fastq files not recognized
0
gravatar for tkirkland
11 months ago by
tkirkland0
tkirkland0 wrote:

I have uploaded data sets that are labelled fastqsanger.gz. But when I try to use those data sets I get the message "No fastqsanger.gz data set available". Can you tell me what I am doing wrong?

Thanks

Theo

ADD COMMENTlink modified 11 months ago by Jennifer Hillman Jackson25k • written 11 months ago by tkirkland0
0
gravatar for Jennifer Hillman Jackson
11 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

I cannot reproduce this at Galaxy Main https://usegalaxy.org.

Double check that:

  • The datasets are actually assigned the datatype (not just uploaded with that file extension)
  • The tool accepts fastqsanger or fastqsanger.gz input

I tested with a few tools that expect fastqsanger formatted input at Galaxy Main. For your case:

https://galaxyproject.org/support/#troubleshooting

Thanks! Jen, Galaxy team

ADD COMMENTlink written 11 months ago by Jennifer Hillman Jackson25k
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