Question: Add reference genome index to RNA STAR tool
0
gravatar for jlrosenkrantz
5 months ago by
jlrosenkrantz0 wrote:

Hello, I would like to request that the rhesus macaque (RheMac8) genome reference index be added as a built-in index in the RNA STAR tool. In the tool it states "If your genome of interest is not listed, contact the Galaxy team". If this is not the correct place to make this kind of request, my apologies.

rna-seq • 142 views
ADD COMMENTlink modified 5 months ago by Jennifer Hillman Jackson24k • written 5 months ago by jlrosenkrantz0
0
gravatar for Jennifer Hillman Jackson
5 months ago by
United States
Jennifer Hillman Jackson24k wrote:

Hello,

This genome and most others that are from the last two most current builds per genome hosted by UCSC will be added. Follow here: https://github.com/galaxyproject/galaxy/issues/1470#issuecomment-208444904

But you do not have to wait. Upload the genome from UCSC into your history and use it now with tools as a Custom genome/build.

https://galaxyproject.org/support/ >> Preparing and using a Custom Reference Genome or Build

Thanks, Jen, Galaxy team

ADD COMMENTlink written 5 months ago by Jennifer Hillman Jackson24k
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