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Question: Deseq2 does not recognizes htseq count data in my history
1
gravatar for farzaneh_mostaed
15 months ago by
farzaneh_mostaed • 10
farzaneh_mostaed • 10 wrote:

Dear all,

I am faced with a strange problem.

2 days ago I run deseq2 on a few htseq count tables in Galaxy and I got the result.

Yesterday when I tried to rerun deseq2 it does not recognize htseq count tables already present in my history.

Only the topmost data set which is cuffdiff out put is shown.

It seems that Galaxy does not access to the full history.

Can anybody explain the source of this problem?

Thank you in advance

Nazanin
rna-seq galaxy deseq2 • 507 views
ADD COMMENT • link •
modified 15 months ago by Jennifer Hillman Jackson ♦ 25k • written 15 months ago by farzaneh_mostaed • 10
0
gravatar for Jennifer Hillman Jackson
15 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

To see all inputs, click inside the box where datasets are selected. This transforms the select into a list view. All potential datasets are not included in the default select view when a history contains over 100 datasets (a recent change to address a specific performance issue with large histories).

Visually, the view will change from this: http://imgur.com/a/QxVD5

To this: http://imgur.com/a/UFezF

If you want me to delete those links after you see them, let me know. The data is anonymous (content cannot be viewed) but you decide.

Hope this helps! Jen, Galaxy team
ADD COMMENT • link written 15 months ago by Jennifer Hillman Jackson ♦ 25k

Dear Jennifer, The problem was solved.

Thank you for devoting time to solve my problem

ADD REPLY • link written 15 months ago by farzaneh_mostaed • 10
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