Question: Help with sorting and merging two biological replicate bam file?
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gravatar for melissa.berto
14 months ago by
melissa.berto0 wrote:

Does Bowtie2 give, as output, a SORTED bam file ? If it doens't, how could I solve this problem? If it does, can I merge two biological replicate, e.g. ChIP ER E2 R1 and ChIP ER E2 R2, together with a tool?

chip-seq • 679 views
ADD COMMENTlink modified 14 months ago by Devon Ryan1.9k • written 14 months ago by melissa.berto0
1
gravatar for Devon Ryan
14 months ago by
Devon Ryan1.9k
Germany
Devon Ryan1.9k wrote:

In Galaxy, bowtie2 will return a sorted BAM file. If you need to merge BAM files you can use the "Merge BAM Files" tool under "NGS: SAMtools".

ADD COMMENTlink written 14 months ago by Devon Ryan1.9k
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