Question: Help with sorting and merging two biological replicate bam file?
0
gravatar for melissa.berto
12 months ago by
melissa.berto0 wrote:

Does Bowtie2 give, as output, a SORTED bam file ? If it doens't, how could I solve this problem? If it does, can I merge two biological replicate, e.g. ChIP ER E2 R1 and ChIP ER E2 R2, together with a tool?

chip-seq • 484 views
ADD COMMENTlink modified 12 months ago by Devon Ryan1.9k • written 12 months ago by melissa.berto0
1
gravatar for Devon Ryan
12 months ago by
Devon Ryan1.9k
Germany
Devon Ryan1.9k wrote:

In Galaxy, bowtie2 will return a sorted BAM file. If you need to merge BAM files you can use the "Merge BAM Files" tool under "NGS: SAMtools".

ADD COMMENTlink written 12 months ago by Devon Ryan1.9k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 82 users visited in the last hour