I used the Galaxy tool to convert the .gff3 annotation file to .gtf format. Going through the .gtf file, I discovered few entries where transcript ID is present but no corresponding gene ID or gene name is available.
I am getting an error when running DESeq2 analysis using this .gtf annotation file: 'genes$gene_id' must be a character vector (or factor) with no NAs
I wonder if it is due to missing gene IDs. Please help.