Question: Rn6 support for Lift-Over?
0
gravatar for jjday
10 weeks ago by
jjday0
United States
jjday0 wrote:

Does anyone know if there are plans to add support for the Rn6 genome assembly to the Lift-Over tool in Galaxy? The only rat genomes available are Rn4 and Rn5. Thanks!

assembly • 61 views
ADD COMMENTlink modified 10 weeks ago • written 10 weeks ago by jjday0
0
gravatar for Jennifer Hillman Jackson
10 weeks ago by
United States
Jennifer Hillman Jackson23k wrote:

Hello,

Yes, this is a goal. The ETA has not been determined. There are some technical factors that need to be resolved before new liftOver data is added. Progress can be tracked here: https://github.com/galaxyproject/galaxy/issues/1470

Meanwhile, use the Batch Coordinate Conversion utility at UCSC http://genome.ucsc.edu. Produce results there and upload into Galaxy.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 10 weeks ago by Jennifer Hillman Jackson23k
0
gravatar for jjday
10 weeks ago by
jjday0
United States
jjday0 wrote:

Thanks Jen and Galaxy team!

ADD COMMENTlink written 10 weeks ago by jjday0
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