Question: Rn6 support for Lift-Over?
0
gravatar for jjday
8 days ago by
jjday0
United States
jjday0 wrote:

Does anyone know if there are plans to add support for the Rn6 genome assembly to the Lift-Over tool in Galaxy? The only rat genomes available are Rn4 and Rn5. Thanks!

assembly • 33 views
ADD COMMENTlink modified 8 days ago • written 8 days ago by jjday0
0
gravatar for Jennifer Hillman Jackson
8 days ago by
United States
Jennifer Hillman Jackson22k wrote:

Hello,

Yes, this is a goal. The ETA has not been determined. There are some technical factors that need to be resolved before new liftOver data is added. Progress can be tracked here: https://github.com/galaxyproject/galaxy/issues/1470

Meanwhile, use the Batch Coordinate Conversion utility at UCSC http://genome.ucsc.edu. Produce results there and upload into Galaxy.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 8 days ago by Jennifer Hillman Jackson22k
0
gravatar for jjday
8 days ago by
jjday0
United States
jjday0 wrote:

Thanks Jen and Galaxy team!

ADD COMMENTlink written 8 days ago by jjday0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 127 users visited in the last hour