Question: Extract Genomic DNA fasta file names?
gravatar for jjrin
9 months ago by
jjrin10 wrote:


I ran the Extract Genomic DNA feature with my gtf file and reference genome fasta file. The fasta output has the coordinates but has a "?" in place of the gene name. For example, the first gene entry is ">?_Scaffold100_65415_65755_+". Is there something wrong with my gtf reference file formatting? I would like my gene names (e.g. "MSTRG.1004") to be there instead of the "?". Thank you for the help!

ADD COMMENTlink modified 9 months ago by Jennifer Hillman Jackson24k • written 9 months ago by jjrin10
gravatar for Jennifer Hillman Jackson
9 months ago by
United States
Jennifer Hillman Jackson24k wrote:


I am retesting this tool and will investigate this at the same time. I suspect that the input may not have the required information, in the expected format, but that will be tested. Please follow progress here:

Thanks, Jen, Galaxy team

ADD COMMENTlink written 9 months ago by Jennifer Hillman Jackson24k
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