Question: Extract Genomic DNA fasta file names?
0
gravatar for jjrin
10 weeks ago by
jjrin10
jjrin10 wrote:

Hello,

I ran the Extract Genomic DNA feature with my gtf file and reference genome fasta file. The fasta output has the coordinates but has a "?" in place of the gene name. For example, the first gene entry is ">?_Scaffold100_65415_65755_+". Is there something wrong with my gtf reference file formatting? I would like my gene names (e.g. "MSTRG.1004") to be there instead of the "?". Thank you for the help!

ADD COMMENTlink modified 10 weeks ago by Jennifer Hillman Jackson22k • written 10 weeks ago by jjrin10
0
gravatar for Jennifer Hillman Jackson
10 weeks ago by
United States
Jennifer Hillman Jackson22k wrote:

Hello,

I am retesting this tool and will investigate this at the same time. I suspect that the input may not have the required information, in the expected format, but that will be tested. Please follow progress here: https://biostar.usegalaxy.org/p/23896/

Thanks, Jen, Galaxy team

ADD COMMENTlink written 10 weeks ago by Jennifer Hillman Jackson22k
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